Lineage for d4jk1x_ (4jk1 X:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1984585Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families) (S)
  5. 1984618Family a.4.13.2: Sigma4 domain [88665] (5 protein domains)
  6. 1984626Protein Sigma70 (SigA, RpoD) [88666] (4 species)
    Pfam PF03979
  7. 1984627Species Escherichia coli [TaxId:562] [116816] (3 PDB entries)
    Uniprot P00579 546-613
  8. 1984629Domain d4jk1x_: 4jk1 X: [307606]
    protein/DNA complex; complexed with g4p, zn

Details for d4jk1x_

PDB Entry: 4jk1 (more details), 3.9 Å

PDB Description: X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraphosphate (ppGpp)
PDB Compounds: (X:) Escherichia coli RNA polymerase sigma70 subunit

SCOPe Domain Sequences for d4jk1x_:

Sequence, based on SEQRES records: (download)

>d4jk1x_ a.4.13.2 (X:) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
qsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeapdaddl
mlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregeidiakried
ginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaeedlaptathvgsel
sqedldddededeedgdddsadddnsidpelarekfaelraqyvvtrdtikakgrshata
qeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitl
ftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrm
sigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgy
kfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptpeelae
rmlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraath
dvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrklrhpsrse
vlrs

Sequence, based on observed residues (ATOM records): (download)

>d4jk1x_ a.4.13.2 (X:) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
qsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeapdaddt
dpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaei
dpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvns
mrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhd
vseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiak
kytnrglqfldliqegniglmkavdkfeyrrgykfstyatwwirqaitrsiadqartiri
pvhmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpig
ddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdyt
leevgkqfdvtrerirqieakalrklrhpsrsevlrs

SCOPe Domain Coordinates for d4jk1x_:

Click to download the PDB-style file with coordinates for d4jk1x_.
(The format of our PDB-style files is described here.)

Timeline for d4jk1x_:

  • d4jk1x_ is new in SCOPe 2.06-stable