Lineage for d4j4jb1 (4j4j B:218-373)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2147804Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2147805Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2148016Family c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains [310632] (5 protein domains)
    strand 5 is parallel to strand 4
    Pfam PF08210; Pfam PF05240
  6. 2148028Protein APOBEC3F [310758] (1 species)
  7. 2148029Species Human (Homo sapiens) [TaxId:9606] [311013] (2 PDB entries)
  8. 2148035Domain d4j4jb1: 4j4j B:218-373 [307565]
    Other proteins in same PDB: d4j4ja2, d4j4jb2
    automated match to d2nyta_
    complexed with zn

Details for d4j4jb1

PDB Entry: 4j4j (more details), 3.1 Å

PDB Description: Crystal structure of the APOBEC3F Vif binding domain
PDB Compounds: (B:) DNA dC->dU-editing enzyme APOBEC-3F

SCOPe Domain Sequences for d4j4jb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4j4jb1 c.97.1.6 (B:218-373) APOBEC3F {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4j4jb1:

Click to download the PDB-style file with coordinates for d4j4jb1.
(The format of our PDB-style files is described here.)

Timeline for d4j4jb1:

  • d4j4jb1 is new in SCOPe 2.06-stable

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