Lineage for d4c8rd2 (4c8r D:96-384)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2404719Family b.82.2.5: TauD/TfdA-like [75038] (5 protein domains)
    automatically mapped to Pfam PF02668
  6. 2404720Protein Gamma-butyrobetaine dioxygenase (BBOX1) catalytic domain [310813] (1 species)
  7. 2404721Species Human (Homo sapiens) [TaxId:9606] [311079] (4 PDB entries)
  8. 2404728Domain d4c8rd2: 4c8r D:96-384 [307101]
    Other proteins in same PDB: d4c8ra1, d4c8rb1, d4c8rc1, d4c8rd1, d4c8re1, d4c8rf1
    automated match to d3ms5a2
    complexed with 6yt, edo, ni, zn

Details for d4c8rd2

PDB Entry: 4c8r (more details), 2.82 Å

PDB Description: human gamma-butyrobetaine dioxygenase (bbox1) in complex with ni(ii) and n-(3-hydroxypicolinoyl)-s-(pyridin-2-ylmethyl)-l-cysteine (ar692b)
PDB Compounds: (D:) Gamma-butyrobetaine dioxygenase

SCOPe Domain Sequences for d4c8rd2:

Sequence; same for both SEQRES and ATOM records: (download)

>d4c8rd2 b.82.2.5 (D:96-384) Gamma-butyrobetaine dioxygenase (BBOX1) catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4c8rd2:

Click to download the PDB-style file with coordinates for d4c8rd2.
(The format of our PDB-style files is described here.)

Timeline for d4c8rd2: