SCOPe 2.08: Domain d3v0ya_: 3v0y A:

Lineage for d3v0ya_ (3v0y A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d3v0ya_: 3v0y A: [306674]
   automated match to d1p0ba_
   protein/RNA complex; complexed with gol, sqo, zn

Details for d3v0ya_

PDB Entry: 3v0y, 1.65 Å

PDB Description: tRNA-Guanine Transglycosylase in complex with lin-benzohypoxanthine inhibitor

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d3v0ya_:

Sequence, based on SEQRES records:

>d3v0ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d3v0ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtatvkalkpetvratgadiilgnt
yhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmqseegvtfmlspersieiqhll
gsdivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvf
enlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpdd
ivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkws
rayihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryfa

Timeline for d3v0ya_:

• d3v0ya_ first appeared in SCOPe 2.06
  
• d3v0ya_ appears in SCOPe 2.07