Lineage for d3pd4b_ (3pd4 B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2149822Fold c.110: DTD-like [69499] (1 superfamily)
    beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC
  4. 2149823Superfamily c.110.1: DTD-like [69500] (3 families) (S)
    active form is a dimer
  5. 2149839Family c.110.1.2: Archaea-specific editing domain of threonyl-tRNA synthetase (Pab-NTD) [310661] (2 protein domains)
    Pfam PF08915
  6. 2149847Protein automated matches [310853] (2 species)
    not a true protein
  7. 2149859Species Pyrococcus abyssi [TaxId:29292] [311214] (5 PDB entries)
  8. 2149869Domain d3pd4b_: 3pd4 B: [306231]
    automated match to d1y2qa_
    protein/RNA complex; complexed with a3g

Details for d3pd4b_

PDB Entry: 3pd4 (more details), 2.4 Å

PDB Description: Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with glycyl-3'-aminoadenosine
PDB Compounds: (B:) threonyl-tRNA synthetase

SCOPe Domain Sequences for d3pd4b_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3pd4b_ c.110.1.2 (B:) automated matches {Pyrococcus abyssi [TaxId: 29292]}

SCOPe Domain Coordinates for d3pd4b_:

Click to download the PDB-style file with coordinates for d3pd4b_.
(The format of our PDB-style files is described here.)

Timeline for d3pd4b_:

  • d3pd4b_ is new in SCOPe 2.06-stable