Lineage for d3d9ob1 (3d9o B:1-136)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006336Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2007623Superfamily a.118.9: ENTH/VHS domain [48464] (5 families) (S)
  5. 2007694Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain) [109975] (4 protein domains)
    found in proteins involved in regulation of nuclear pre-mRNA; some sequence similarity to VHS domain
    SMART 00582; Pfam PF04818
  6. 2007711Protein SCAF8; RNA-binding protein 16 [310741] (1 species)
  7. 2007712Species Human (Homo sapiens) [TaxId:9606] [310994] (4 PDB entries)
  8. 2007718Domain d3d9ob1: 3d9o B:1-136 [305200]
    Other proteins in same PDB: d3d9oa2, d3d9ob2, d3d9oz_
    complexed with nh4, so4

Details for d3d9ob1

PDB Entry: 3d9o (more details), 2 Å

PDB Description: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
PDB Compounds: (B:) RNA-binding protein 16

SCOPe Domain Sequences for d3d9ob1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3d9ob1 a.118.9.4 (B:1-136) SCAF8; RNA-binding protein 16 {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d3d9ob1:

Click to download the PDB-style file with coordinates for d3d9ob1.
(The format of our PDB-style files is described here.)

Timeline for d3d9ob1:

  • d3d9ob1 is new in SCOPe 2.06-stable