SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d2z0cb2 (2z0c B:190-308)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2170593Fold d.52: Alpha-lytic protease prodomain-like [54805] (10 superfamilies)
    core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta
  4. 2170612Superfamily d.52.2: GMP synthetase C-terminal dimerisation domain [54810] (2 families) (S)
    automatically mapped to Pfam PF00958
  5. 2170629Family d.52.2.0: automated matches [227193] (1 protein)
    not a true family
  6. 2170630Protein automated matches [226919] (4 species)
    not a true protein
  7. 2170640Species Pyrococcus horikoshii [TaxId:53953] [225701] (2 PDB entries)
  8. 2170641Domain d2z0cb2: 2z0c B:190-308 [304793]
    Other proteins in same PDB: d2z0ca1, d2z0cb1
    automated match to d3a4ia2

Details for d2z0cb2

PDB Entry: 2z0c (more details), 1.8 Å

PDB Description: Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3
PDB Compounds: (B:) GMP synthase [glutamine-hydrolyzing] subunit B

SCOPe Domain Sequences for d2z0cb2:

Sequence, based on SEQRES records: (download)

>d2z0cb2 d.52.2.0 (B:190-308) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
gpglavrvigevtpekirivreanaiveeeveraglrpwqafavllgvktvgvqgdiray
ketiavrivesidgmtanamnvpwevlqriafritseipevgrvlyditnkppatiefe

Sequence, based on observed residues (ATOM records): (download)

>d2z0cb2 d.52.2.0 (B:190-308) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
gpglavrvigevtpekirivreanaiveeeveraglrpwqafavllgvktvgvqgdiray
ketiavrivesmtanamnvpwevlqriafritseipevgrvlyditnkppatiefe

SCOPe Domain Coordinates for d2z0cb2:

Click to download the PDB-style file with coordinates for d2z0cb2.
(The format of our PDB-style files is described here.)

Timeline for d2z0cb2:

  • d2z0cb2 is new in SCOPe 2.06-stable

View in 3D
Domains from same chain:
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d2z0cb1