Lineage for d2wmka2 (2wmk A:841-1005)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2041816Fold b.24: Hyaluronate lyase-like, C-terminal domain [49862] (2 superfamilies)
    sandwich, 10 strands in 2 sheets; "folded meander"
  4. 2041873Superfamily b.24.2: Glycosyl hydrolase family 98 C-terminal domain-like [310597] (2 families) (S)
    C-terminal half of Pfam PF08307
    Slightly different topology from Hyaluronate lyase; contains helical insert
  5. 2041878Family b.24.2.0: automated matches [310667] (1 protein)
    not a true family
  6. 2041879Protein automated matches [310861] (2 species)
    not a true protein
  7. 2041883Species Streptococcus pneumoniae [TaxId:406556] [311249] (13 PDB entries)
  8. 2041886Domain d2wmka2: 2wmk A:841-1005 [304600]
    Other proteins in same PDB: d2wmka1, d2wmkb1
    automated match to d2wmfa2

Details for d2wmka2

PDB Entry: 2wmk (more details), 1.9 Å

PDB Description: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 (Sp3GH98) in complex with the A-LewisY pentasaccharide blood group antigen.
PDB Compounds: (A:) fucolectin-related protein

SCOPe Domain Sequences for d2wmka2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2wmka2 b.24.2.0 (A:841-1005) automated matches {Streptococcus pneumoniae [TaxId: 406556]}

SCOPe Domain Coordinates for d2wmka2:

Click to download the PDB-style file with coordinates for d2wmka2.
(The format of our PDB-style files is described here.)

Timeline for d2wmka2:

  • d2wmka2 is new in SCOPe 2.06-stable

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