Lineage for d2wmka1 (2wmk A:422-840)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2113903Family c.37.1.0: automated matches [191323] (1 protein)
    not a true family
  6. 2113904Protein automated matches [190123] (130 species)
    not a true protein
  7. 2114720Species Streptococcus pneumoniae [TaxId:406556] [311248] (13 PDB entries)
  8. 2114723Domain d2wmka1: 2wmk A:422-840 [304599]
    Other proteins in same PDB: d2wmka2, d2wmkb2
    automated match to d2wmfa1

Details for d2wmka1

PDB Entry: 2wmk (more details), 1.9 Å

PDB Description: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 (Sp3GH98) in complex with the A-LewisY pentasaccharide blood group antigen.
PDB Compounds: (A:) fucolectin-related protein

SCOPe Domain Sequences for d2wmka1:

Sequence, based on SEQRES records: (download)

>d2wmka1 c.37.1.0 (A:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdklkesvsssriqikeitspefsstqarkeylnklypmn

Sequence, based on observed residues (ATOM records): (download)

>d2wmka1 c.37.1.0 (A:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdiqikeitspefsstqarkeylnklypmn

SCOPe Domain Coordinates for d2wmka1:

Click to download the PDB-style file with coordinates for d2wmka1.
(The format of our PDB-style files is described here.)

Timeline for d2wmka1:

  • d2wmka1 is new in SCOPe 2.06-stable

View in 3D
Domains from same chain:
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d2wmka2