SCOPe 2.07: Domain d1rn5b_: 1rn5 B:

Lineage for d1rn5b_ (1rn5 B:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
   automatically mapped to Pfam PF01327

6. Protein Peptide deformylase [56422] (11 species)

7. Species Leptospira interrogans [TaxId:173] [103340] (5 PDB entries)
   Uniprot Q72S74

8. Domain d1rn5b_: 1rn5 B: [303024]
   automated match to d1y6ha_
   complexed with cbx, gly, zn

Details for d1rn5b_

PDB Entry: 1rn5, 2.2 Å

PDB Description: crystal structure of LiPDF

PDB Compounds: (B:) Peptide deformylase

SCOPe Domain Sequences for d1rn5b_:

Sequence; same for both SEQRES and ATOM records:

>d1rn5b_ d.167.1.1 (B:) Peptide deformylase {Leptospira interrogans [TaxId: 173]}
svrkilrmgdpilrkisepvtedeiqtkefkklirdmfdtmrhaegvglaapqigilkqi
vvvgsednerypgtpdvperiilnpvitpltkdtsgfwegclsvpgmrgyverpnqirmq
wmdekgnqfdetidgykaivyqhecdhlqgilyvdrlkdtklfgfnetldsshnvld

Timeline for d1rn5b_:

• d1rn5b_ first appeared in SCOPe 2.06
  
• d1rn5b_ appears in the current release, SCOPe 2.08