Lineage for d1dgta6 (1dgt A:401-581)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1998807Superfamily a.60.2: RuvA domain 2-like [47781] (7 families) (S)
    duplication: contains two helix-hairpin-helix (HhH) motifs
  5. 1998832Family a.60.2.2: NAD+-dependent DNA ligase, domain 3 [47786] (1 protein)
  6. 1998833Protein NAD+-dependent DNA ligase, domain 3 [47787] (1 species)
    duplication: consists of two RuvA-like domains (four HhH motifs); also contains a zinc-finger subdomain
  7. 1998834Species Thermus filiformis [TaxId:276] [47788] (3 PDB entries)
  8. 1998839Domain d1dgta6: 1dgt A:401-581 [302334]
    Other proteins in same PDB: d1dgta4, d1dgta5
    automated match to d1dgsa1
    protein/DNA complex; complexed with amp, zn

Details for d1dgta6

PDB Entry: 1dgt (more details), 2.9 Å

PDB Description: crystal structure of nad+-dependent dna ligase
PDB Compounds: (A:) DNA ligase

SCOPe Domain Sequences for d1dgta6:

Sequence; same for both SEQRES and ATOM records: (download)

>d1dgta6 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}

SCOPe Domain Coordinates for d1dgta6:

Click to download the PDB-style file with coordinates for d1dgta6.
(The format of our PDB-style files is described here.)

Timeline for d1dgta6:

  • d1dgta6 is new in SCOPe 2.06-stable