SCOPe 2.06: Domain d1dgta4: 1dgt A:1-314

Lineage for d1dgta4 (1dgt A:1-314)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families)
   has a circularly permuted topology

5. Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins)
   automatically mapped to Pfam PF01653

6. Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species)
   contains additional, N-terminal all-alpha subdomain

7. Species Thermus filiformis [TaxId:276] [56099] (3 PDB entries)

8. Domain d1dgta4: 1dgt A:1-314 [302332]
   Other proteins in same PDB: d1dgta5, d1dgta6
   automated match to d1dgsa3
   protein/DNA complex; complexed with amp, zn

Details for d1dgta4

PDB Entry: 1dgt, 2.9 Å

PDB Description: crystal structure of nad+-dependent dna ligase

PDB Compounds: (A:) DNA ligase

SCOPe Domain Sequences for d1dgta4:

Sequence; same for both SEQRES and ATOM records:

>d1dgta4 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
mtreearrrinelrdliryhnyryyvladpeisdaeydrllrelkeleerfpefkspdsp
teqvgarpleptfrpvrhptrmysldnaftyeevlafeerlereaeapslytvehkvdgl
svlyyeegvwstgsgdgevgeevtqnlltiptiprrlkgvpdrlevrgevympieaflrl
neeleergekvfknprnaaagslrqkdprvtakrglratfyalglglgleesglksqyel
llwlkekgfpvehcyekalgaegveevyrrglaqrhalpfeadgvvlklddltlwgelgy
taraprfalaykfp

Timeline for d1dgta4:

• d1dgta4 is new in SCOPe 2.06-stable
  
• d1dgta4 appears in SCOPe 2.07
  
• d1dgta4 appears in the current release, SCOPe 2.08