SCOPe 2.07: Domain d1gtmb1: 1gtm B:181-419

Lineage for d1gtmb1 (1gtm B:181-419)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
   extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

6. Protein Glutamate dehydrogenase [51884] (8 species)

7. Species Pyrococcus furiosus [TaxId:2261] [51886] (1 PDB entry)

8. Domain d1gtmb1: 1gtm B:181-419 [30224]
   Other proteins in same PDB: d1gtma2, d1gtmb2, d1gtmc2
   complexed with so4

Details for d1gtmb1

PDB Entry: 1gtm, 2.2 Å

PDB Description: structure of glutamate dehydrogenase

PDB Compounds: (B:) glutamate dehydrogenase

SCOPe Domain Sequences for d1gtmb1:

Sequence; same for both SEQRES and ATOM records:

>d1gtmb1 c.2.1.7 (B:181-419) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}
ggslgrieatargasytireaakvlgwdtlkgktiaiqgygnagyylakimsedfgmkvv
avsdskggiynpdglnadevlkwknehgsvkdfpgatnitneellelevdvlapaaieev
itkknadnikakivaevangpvtpeadeilfekgilqipdflcnaggvtvsyfewvqnit
gyywtieevrerldkkmtkafydvyniakeknihmrdaayvvavqrvyqamldrgwvkh

Timeline for d1gtmb1:

• d1gtmb1 first appeared (with stable ids) in SCOP 1.55
  
• d1gtmb1 appears in SCOPe 2.06
  
• d1gtmb1 appears in the current release, SCOPe 2.08