SCOPe 2.08: Domain d4ph0c1: 4ph0 C:1-126

Lineage for d4ph0c1 (4ph0 C:1-126)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.0: automated matches [227254] (1 protein)
   not a true family

6. Protein automated matches [227039] (3 species)
   not a true protein

7. Species Bovine leukemia virus [TaxId:11901] [273631] (3 PDB entries)

8. Domain d4ph0c1: 4ph0 C:1-126 [300219]
   Other proteins in same PDB: d4ph0a2, d4ph0b2, d4ph0c2, d4ph0d2, d4ph0e2, d4ph0f2
   automated match to d4ph0a1

Details for d4ph0c1

PDB Entry: 4ph0, 2.75 Å

PDB Description: capsid protein from bovine leukemia virus

PDB Compounds: (C:) BLV capsid

SCOPe Domain Sequences for d4ph0c1:

Sequence, based on SEQRES records:

>d4ph0c1 a.73.1.0 (C:1-126) automated matches {Bovine leukemia virus [TaxId: 11901]}
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlpt

Sequence, based on observed residues (ATOM records):

>d4ph0c1 a.73.1.0 (C:1-126) automated matches {Bovine leukemia virus [TaxId: 11901]}
piisegnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqyia
spvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqawk
nlpt

Timeline for d4ph0c1:

• d4ph0c1 first appeared in SCOPe 2.06
  
• d4ph0c1 appears in SCOPe 2.07