SCOPe 2.08: Domain d5reqc1: 5req C:4-560

Lineage for d5reqc1 (5req C:4-560)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.19: Cobalamin (vitamin B12)-dependent enzymes [51703] (4 families)

5. Family c.1.19.1: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain [51704] (2 proteins)
   the subunits are clearly related but only one (alpha) is active
   automatically mapped to Pfam PF01642

6. Protein Methylmalonyl-CoA mutase alpha subunit, domain 1 [88709] (1 species)

7. Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [88710] (8 PDB entries)

8. Domain d5reqc1: 5req C:4-560 [29634]
   Other proteins in same PDB: d5reqa2, d5reqb1, d5reqb2, d5reqc2, d5reqd1, d5reqd2
   complexed with b12, gol, mcd, scd; mutant

Details for d5reqc1

PDB Entry: 5req, 2.2 Å

PDB Description: methylmalonyl-coa mutase, y89f mutant, substrate complex

PDB Compounds: (C:) protein (methylmalonyl-coa mutase alpha-subunit)

SCOPe Domain Sequences for d5reqc1:

Sequence; same for both SEQRES and ATOM records:

>d5reqc1 c.1.19.1 (C:4-560) Methylmalonyl-CoA mutase alpha subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
lprfdsvdlgnapvpadaarrfeelaakagtgeawetaeqipvgtlfnedvykdmdwldt
yagippfvhgpyatmyafrpwtirqfagfstakesnafyrrnlaagqkglsvafdlpthr
gydsdnprvagdvgmagvaidsiydmrelfagipldqmsvsmtmngavlpilalyvvtae
eqgvkpeqlagtiqndilkefmvrntyiyppqpsmriiseifaytsanmpkwnsisisgy
hmqeagatadiemaytladgvdyiragesvglnvdqfaprlsffwgigmnffmevaklra
armlwaklvhqfgpknpksmslrthsqtsgwsltaqdvynnvvrtcieamaatqghtqsl
htnsldeaialptdfsariarntqlflqqesgttrvidpwsgsayveeltwdlarkawgh
iqevekvggmakaiekgipkmrieeaaartqaridsgrqpligvnkyrleheppldvlkv
dnstvlaeqkaklvklraerdpekvkaaldkitwaagnpddkdpdrnllklcidagrama
tvgemsdalekvfgryt

Timeline for d5reqc1:

• d5reqc1 first appeared (with stable ids) in SCOP 1.55
  
• d5reqc1 appears in SCOPe 2.07