SCOPe 2.06: Domain d6reqd1: 6req D:20-475

Lineage for d6reqd1 (6req D:20-475)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.19: Cobalamin (vitamin B12)-dependent enzymes [51703] (4 families)

5. Family c.1.19.1: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain [51704] (2 proteins)
   the subunits are clearly related but only one (alpha) is active
   automatically mapped to Pfam PF01642

6. Protein Methylmalonyl-CoA mutase beta subunit, domain 1 [88711] (1 species)
   the subunits are clearly related but only one (alpha) is active

7. Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [88712] (8 PDB entries)

8. Domain d6reqd1: 6req D:20-475 [29627]
   Other proteins in same PDB: d6reqa1, d6reqa2, d6reqb2, d6reqc1, d6reqc2, d6reqd2
   complexed with 3cp, b12, gol

Details for d6reqd1

PDB Entry: 6req, 2.2 Å

PDB Description: methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex

PDB Compounds: (D:) protein (methylmalonyl-coa mutase)

SCOPe Domain Sequences for d6reqd1:

Sequence; same for both SEQRES and ATOM records:

>d6reqd1 c.1.19.1 (D:20-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
tlslagdfpkateeqwerevekvlnrgrppekqltfaeclkrltvhtvdgidivpmyrpk
dapkklgypgvapftrgttvrngdmdawdvralhedpdekftrkaileglergvtslllr
vdpdaiapehldevlsdvllemtkvevfsrydqgaaaealvsvyersdkpakdlalnlgl
dpigfaalqgtepdltvlgdwvrrlakfspdsravtidaniyhnagagdvaelawalatg
aeyvralveqgftateafdtinfrvtathdqfltiarlralreawarigevfgvdedkrg
arqnaitswreltredpyvnilrgsiatfsasvggaesittlpftqalglpeddfplria
rntgivlaeevnigrvndpaggsyyvesltrsladaawkefqeveklggmskavmtehvt
kvldacnaerakrlanrkqpitavsefpmigarsie

Timeline for d6reqd1:

• d6reqd1 first appeared (with stable ids) in SCOP 1.55
  
• d6reqd1 appears in SCOPe 2.05
  
• d6reqd1 appears in SCOPe 2.07
  
• d6reqd1 appears in the current release, SCOPe 2.08