Lineage for d5rubb1 (5rub B:138-457)

  1. Root: SCOP 1.67
  2. 383641Class c: Alpha and beta proteins (a/b) [51349] (130 folds)
  3. 383642Fold c.1: TIM beta/alpha-barrel [51350] (28 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 386354Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (1 family) (S)
  5. 386355Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (1 protein)
    N-terminal domain is alpha+beta
  6. 386356Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (8 species)
  7. 386402Species Rhodospirillum rubrum [TaxId:1085] [51657] (5 PDB entries)
  8. 386404Domain d5rubb1: 5rub B:138-457 [29383]
    Other proteins in same PDB: d5ruba2, d5rubb2

Details for d5rubb1

PDB Entry: 5rub (more details), 1.7 Å

PDB Description: crystallographic refinement and structure of ribulose-1,5-bisphosphate carboxylase from rhodospirillum rubrum at 1.7 angstroms resolution

SCOP Domain Sequences for d5rubb1:

Sequence, based on SEQRES records: (download)

>d5rubb1 c.1.14.1 (B:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgtmgfgkmegessdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmp
gffenlgnanviltagggafghidgpvagarslrqawqawrdgvpvldyarehkelaraf
esfpgdadqiypgwrkalgv

Sequence, based on observed residues (ATOM records): (download)

>d5rubb1 c.1.14.1 (B:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmpgffenlgnanvi
ltagggafghidgpvagarslrqawqawrdgvpvldyarehkelarafesfpgdadqiyp
gwrkalgv

SCOP Domain Coordinates for d5rubb1:

Click to download the PDB-style file with coordinates for d5rubb1.
(The format of our PDB-style files is described here.)

Timeline for d5rubb1:

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Domains from same chain:
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d5rubb2