SCOPe 2.08: Domain d5rubb1: 5rub B:138-457

Lineage for d5rubb1 (5rub B:138-457)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (14 species)

7. Species Rhodospirillum rubrum [TaxId:1085] [51657] (5 PDB entries)

8. Domain d5rubb1: 5rub B:138-457 [29383]
   Other proteins in same PDB: d5ruba2, d5rubb2

Details for d5rubb1

PDB Entry: 5rub, 1.7 Å

PDB Description: crystallographic refinement and structure of ribulose-1,5-bisphosphate carboxylase from rhodospirillum rubrum at 1.7 angstroms resolution

PDB Compounds: (B:) rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase)

SCOPe Domain Sequences for d5rubb1:

Sequence, based on SEQRES records:

>d5rubb1 c.1.14.1 (B:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgtmgfgkmegessdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmp
gffenlgnanviltagggafghidgpvagarslrqawqawrdgvpvldyarehkelaraf
esfpgdadqiypgwrkalgv

Sequence, based on observed residues (ATOM records):

>d5rubb1 c.1.14.1 (B:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmpgffenlgnanvi
ltagggafghidgpvagarslrqawqawrdgvpvldyarehkelarafesfpgdadqiyp
gwrkalgv

Timeline for d5rubb1:

• d5rubb1 first appeared (with stable ids) in SCOP 1.55
  
• d5rubb1 appears in SCOPe 2.07