SCOP 1.75: Domain d5ruba1: 5rub A:138-457

Lineage for d5ruba1 (5rub A:138-457)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (1 family)

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (1 protein)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (12 species)

7. Species Rhodospirillum rubrum [TaxId:1085] [51657] (5 PDB entries)

8. Domain d5ruba1: 5rub A:138-457 [29382]
   Other proteins in same PDB: d5ruba2, d5rubb2

Details for d5ruba1

PDB Entry: 5rub, 1.7 Å

PDB Description: crystallographic refinement and structure of ribulose-1,5-bisphosphate carboxylase from rhodospirillum rubrum at 1.7 angstroms resolution

PDB Compounds: (A:) rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase)

SCOP Domain Sequences for d5ruba1:

Sequence, based on SEQRES records:

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgtmgfgkmegessdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmp
gffenlgnanviltagggafghidgpvagarslrqawqawrdgvpvldyarehkelaraf
esfpgdadqiypgwrkalgv

Sequence, based on observed residues (ATOM records):

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
gpsvnisalwkvlgrpevdgglvvgtiikpklglrpkpfaeachafwlggdfikndepqg
nqpfaplrdtialvadamrraqdetgeaklfsanitaddpfeiiargeyvletfgenash
vallvdgyvagaaaittarrrfpdnflhyhraghgavtspqskrgytafvhckmarlqga
sgihtgtssdraiaymltqdeaqgpfyrqswggmkactpiisggmnalrmpgffenlgna
nviltagggafghidgpvagarslrqawqawrdgvpvldyarehkelarafesfpgdadq
iypgwrkalgv

Timeline for d5ruba1:

• d5ruba1 first appeared (with stable ids) in SCOP 1.55
  
• d5ruba1 appears in SCOP 1.73
  
• d5ruba1 appears in SCOPe 2.01
  
• d5ruba1 appears in the current release, SCOPe 2.08