Lineage for d2yzra_ (2yzr A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2079053Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2079793Family c.1.2.0: automated matches [191350] (1 protein)
    not a true family
  6. 2079794Protein automated matches [190292] (34 species)
    not a true protein
  7. 2079908Species Methanocaldococcus jannaschii [TaxId:243232] [235508] (3 PDB entries)
  8. 2079913Domain d2yzra_: 2yzr A: [290615]
    automated match to d2yzrb_
    complexed with cl

Details for d2yzra_

PDB Entry: 2yzr (more details), 2.3 Å

PDB Description: Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii
PDB Compounds: (A:) Pyridoxal biosynthesis lyase pdxS

SCOPe Domain Sequences for d2yzra_:

Sequence, based on SEQRES records: (download)

>d2yzra_ c.1.2.0 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
tdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarmsdpa
lieeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpf
vcgarnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygv
akfyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvv
nfaaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevs
knlgeamkg

Sequence, based on observed residues (ATOM records): (download)

>d2yzra_ c.1.2.0 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
tdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadirggvarmsdpali
eeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpfvc
garnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygvak
fyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvvnf
aaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevskn
lgeamkg

SCOPe Domain Coordinates for d2yzra_:

Click to download the PDB-style file with coordinates for d2yzra_.
(The format of our PDB-style files is described here.)

Timeline for d2yzra_:

  • d2yzra_ is new in SCOPe 2.06-stable