SCOPe 2.08: Domain d2yzra_: 2yzr A:

Lineage for d2yzra_ (2yzr A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.0: automated matches [191350] (1 protein)
   not a true family

6. Protein automated matches [190292] (36 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [235508] (3 PDB entries)

8. Domain d2yzra_: 2yzr A: [290615]
   automated match to d2yzrb_
   complexed with cl

Details for d2yzra_

PDB Entry: 2yzr, 2.3 Å

PDB Description: Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii

PDB Compounds: (A:) Pyridoxal biosynthesis lyase pdxS

SCOPe Domain Sequences for d2yzra_:

Sequence, based on SEQRES records:

>d2yzra_ c.1.2.0 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
tdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarmsdpa
lieeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpf
vcgarnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygv
akfyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvv
nfaaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevs
knlgeamkg

Sequence, based on observed residues (ATOM records):

>d2yzra_ c.1.2.0 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
tdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadirggvarmsdpali
eeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpfvc
garnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygvak
fyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvvnf
aaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevskn
lgeamkg

Timeline for d2yzra_:

• d2yzra_ first appeared in SCOPe 2.06
  
• d2yzra_ appears in SCOPe 2.07