SCOPe 2.05: Domain d1vjsa2: 1vjs A:3-393

Lineage for d1vjsa2 (1vjs A:3-393)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Bacterial alpha-amylase [51447] (10 species)

7. Species Bacillus licheniformis [TaxId:1402] [51448] (4 PDB entries)

8. Domain d1vjsa2: 1vjs A:3-393 [28701]
   Other proteins in same PDB: d1vjsa1

Details for d1vjsa2

PDB Entry: 1vjs, 1.7 Å

PDB Description: structure of alpha-amylase precursor

PDB Compounds: (A:) alpha-amylase

SCOPe Domain Sequences for d1vjsa2:

Sequence, based on SEQRES records:

>d1vjsa2 c.1.8.1 (A:3-393) Bacterial alpha-amylase {Bacillus licheniformis [TaxId: 1402]}
lngtlmqyfewympndgqhwkrlqndsaylaehgitavwippaykgtsqadvgygaydly
dlgefhqkgtvrtkygtkgelqsaikslhsrdinvygdvvinhkggadatedvtavevdp
adrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwdesrklnriykfqgkaw
dwevsnengnydylmyadidydhpdvaaeikrwgtwyanelqldgfrldavkhikfsflr
dwvnhvrektgkemftvaeywqndlgalenylnktnfnhsvfdvplhyqfhaastqgggy
dmrkllnstvvskhplkavtfvdnhdtqpgqslestvqtwfkplayafiltresgypqvf
ygdmygtkgdsqreipalkhkiepilkarkq

Sequence, based on observed residues (ATOM records):

>d1vjsa2 c.1.8.1 (A:3-393) Bacterial alpha-amylase {Bacillus licheniformis [TaxId: 1402]}
lngtlmqyfewympndgqhwkrlqndsaylaehgitavwippaykgtsqadvgygaydly
dlgefhqkgtvrtkygtkgelqsaikslhsrdinvygdvvinhkggadatedvtavevdp
adrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwdesrklnriykfqgkay
dylmyadidydhpdvaaeikrwgtwyanelqldgfrldavkhikfsflrdwvnhvrektg
kemftvaeywqndlgalenylnktnfnhsvfdvplhyqfhaastqgggydmrkllnstvv
skhplkavtfvdnhdtqpgqslestvqtwfkplayafiltresgypqvfygdmygtkgds
qreipalkhkiepilkarkq

Timeline for d1vjsa2:

• d1vjsa2 first appeared (with stable ids) in SCOP 1.55, called d1vjs_2
  
• d1vjsa2 appears in SCOPe 2.04
  
• d1vjsa2 appears in SCOPe 2.06
  
• d1vjsa2 appears in the current release, SCOPe 2.08