SCOPe 2.06: Domain d1f3td2: 1f3t D:44-283

Lineage for d1f3td2 (1f3t D:44-283)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Eukaryotic ornithine decarboxylase [51423] (3 species)

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
   Uniprot P07805

8. Domain d1f3td2: 1f3t D:44-283 [28658]
   Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
   complexed with plp, put

Details for d1f3td2

PDB Entry: 1f3t, 2 Å

PDB Description: crystal structure of trypanosoma brucei ornithine decarboxylase (odc) complexed with putrescine, odc's reaction product.

PDB Compounds: (D:) ornithine decarboxylase

SCOPe Domain Sequences for d1f3td2:

Sequence, based on SEQRES records:

>d1f3td2 c.1.6.1 (D:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristddslar
crlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgt
elgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Sequence, based on observed residues (ATOM records):

>d1f3td2 c.1.6.1 (D:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristlsvkfg
akvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhi
ldigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Timeline for d1f3td2:

• d1f3td2 first appeared (with stable ids) in SCOP 1.55
  
• d1f3td2 appears in SCOPe 2.05
  
• d1f3td2 appears in SCOPe 2.07
  
• d1f3td2 appears in the current release, SCOPe 2.08