SCOPe 2.05: Domain d1gylb_: 1gyl B:

Lineage for d1gylb_ (1gyl B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein Glycolate oxidase [51404] (1 species)

7. Species Spinach (Spinacia oleracea) [TaxId:3562] [51405] (4 PDB entries)

8. Domain d1gylb_: 1gyl B: [28611]
   complexed with fmn

Details for d1gylb_

PDB Entry: 1gyl, 3 Å

PDB Description: involvement of tyr24 and trp108 in substrate binding and substrate specificity of glycolate oxidase

PDB Compounds: (B:) glycolate oxidase

SCOPe Domain Sequences for d1gylb_:

Sequence, based on SEQRES records:

>d1gylb_ c.1.4.1 (B:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlgkmdkandsglssyvagqidrslswkdvawlqtitslpilvkgvitaedarl
avqhgaagiivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalal
gaagvfigrpvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwd

Sequence, based on observed residues (ATOM records):

>d1gylb_ c.1.4.1 (B:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlglssyvagqidrslswkdvawlqtitslpilvkgvitaedarlavqhgaagi
ivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalalgaagvfigr
pvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwd

Timeline for d1gylb_:

• d1gylb_ first appeared (with stable ids) in SCOP 1.55
  
• d1gylb_ appears in SCOPe 2.04
  
• d1gylb_ appears in SCOPe 2.06
  
• d1gylb_ appears in the current release, SCOPe 2.08