Lineage for d1ytub2 (1ytu B:1-170)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2454323Fold c.44: Phosphotyrosine protein phosphatases I-like [52787] (3 superfamilies)
    3 layers: a/b/a; parallel beta-sheet of 4 strands, order 2134
  4. 2454500Superfamily c.44.3: PIWI domain N-terminal-like [310581] (2 families) (S)
  5. 2454501Family c.44.3.1: PIWI domain N-terminal [310609] (4 protein domains)
    PubMed 15565169 notes that both halves of PIWI are usually a single evolutionary unit; however, fragments have been characterized separately. The C-terminal half is (c.55.3.10)
  6. 2454545Protein Hypothetical protein AF1318 [310688] (1 species)
  7. 2454546Species Archaeoglobus fulgidus [TaxId:2234] [310905] (3 PDB entries)
  8. 2454551Domain d1ytub2: 1ytu B:1-170 [284798]
    Other proteins in same PDB: d1ytua3, d1ytub3
    protein/RNA complex; complexed with mg

Details for d1ytub2

PDB Entry: 1ytu (more details), 2.5 Å

PDB Description: Structural basis for 5'-end-specific recognition of the guide RNA strand by the A. fulgidus PIWI protein
PDB Compounds: (B:) hypothetical protein af1318

SCOPe Domain Sequences for d1ytub2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ytub2 c.44.3.1 (B:1-170) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}

SCOPe Domain Coordinates for d1ytub2:

Click to download the PDB-style file with coordinates for d1ytub2.
(The format of our PDB-style files is described here.)

Timeline for d1ytub2:

View in 3D
Domains from same chain:
(mouse over for more information)