SCOP 1.55: Domain d1vdeb1: 1vde B:1-180,B:416-454

Lineage for d1vdeb1 (1vde B:1-180,B:416-454)

1. Root: SCOP 1.55

2. Class b: All beta proteins [48724] (93 folds)

3. Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)

4. Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (2 families)

5. Family b.86.1.2: Intein (protein splicing domain) [51298] (3 proteins)

6. Protein PI-Scei intein [51299] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (3 PDB entries)

8. Domain d1vdeb1: 1vde B:1-180,B:416-454 [28379]
   Other proteins in same PDB: d1vdea2, d1vdea3, d1vdeb2, d1vdeb3

Details for d1vdeb1

PDB Entry: 1vde, 2.4 Å

PDB Description: pi-scei, a homing endonuclease with protein splicing activity

SCOP Domain Sequences for d1vdeb1:

Sequence, based on SEQRES records:

>d1vdeb1 b.86.1.2 (B:1-180,B:416-454) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgriv
elvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtya
Xcrgfyfelqelkeddyygitlsddsdhqfllanqvvvhn

Sequence, based on observed residues (ATOM records):

>d1vdeb1 b.86.1.2 (B:1-180,B:416-454) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlevitfemgqkkapdgrivelvkevsksy
pisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyaXcrgfyfelq
elkeddyygitlsddsdhqfllanqvvvhn

Timeline for d1vdeb1:

• d1vdeb1 appears in SCOP 1.57
  
• d1vdeb1 appears in the current release, SCOPe 2.08