Class b: All beta proteins [48724] (144 folds) |
Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily) complex fold made of five beta-hairpin units and a b-ribbon arc |
Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (2 families) duplication: contains two intertwined structural repeats |
Family b.86.1.2: Intein (protein splicing domain) [51298] (4 proteins) |
Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species) also contains a homing endonuclease and DNA-binding domains |
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (8 PDB entries) |
Domain d1ef0b1: 1ef0 B:1-180,B:416-458 [28377] Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3 miniprecursor; a few extra residues are added at the N-terminus |
PDB Entry: 1ef0 (more details), 2.1 Å
SCOP Domain Sequences for d1ef0b1:
Sequence, based on SEQRES records: (download)
>d1ef0b1 b.86.1.2 (B:1-180,B:416-458) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)} afakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk sdssrevpellkftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgriv elvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtya Xcrgfyfelqelkeddyygitlsddsdhqfllanqvvvhacger
>d1ef0b1 b.86.1.2 (B:1-180,B:416-458) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)} afakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqkslkftcn athelvvrtprsvrrlsrveyfevitfemgqkkapdgrivelvkevsksypisegperan elvesyrkasnkayfewtieardlsllgshvrkatyqtyaXcrgfyfelqelkeddyygi tlsddsdhqfllanqvvvhacger
Timeline for d1ef0b1: