Lineage for d1ef0b1 (1ef0 B:1-180,B:416-458)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 303882Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
    complex fold made of five beta-hairpin units and a b-ribbon arc
  4. 303883Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (2 families) (S)
    duplication: contains two intertwined structural repeats
  5. 303888Family b.86.1.2: Intein (protein splicing domain) [51298] (3 proteins)
  6. 303895Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species)
    also contains a homing endonuclease and DNA-binding domains
  7. 303896Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (7 PDB entries)
  8. 303902Domain d1ef0b1: 1ef0 B:1-180,B:416-458 [28377]
    Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3
    miniprecursor; a few extra residues are added at the N-terminus
    complexed with zn

Details for d1ef0b1

PDB Entry: 1ef0 (more details), 2.1 Å

PDB Description: crystal structure of pi-scei miniprecursor

SCOP Domain Sequences for d1ef0b1:

Sequence, based on SEQRES records: (download)

>d1ef0b1 b.86.1.2 (B:1-180,B:416-458) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}

Sequence, based on observed residues (ATOM records): (download)

>d1ef0b1 b.86.1.2 (B:1-180,B:416-458) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}

SCOP Domain Coordinates for d1ef0b1:

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Timeline for d1ef0b1: