Lineage for d1u04a4 (1u04 A:545-770)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2883383Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2885833Superfamily c.55.3: Ribonuclease H-like [53098] (18 families) (S)
    consists of one domain of this fold
  5. 2887170Family c.55.3.15: PIWI domain C-terminal [310608] (4 proteins)
    PubMed 15565169 notes that both halves of PIWI are usually a single evolutionary unit; however, fragments have been characterized separately. The N-terminal half is (c.44.3.1)
  6. 2887179Protein Argonaute homologue PF0537 [310685] (1 species)
  7. 2887180Species Pyrococcus furiosus [TaxId:2261] [310902] (3 PDB entries)
  8. 2887181Domain d1u04a4: 1u04 A:545-770 [282899]
    Other proteins in same PDB: d1u04a1, d1u04a3, d1u04a5
    protein/RNA complex

Details for d1u04a4

PDB Entry: 1u04 (more details), 2.25 Å

PDB Description: crystal structure of full length argonaute from pyrococcus furiosus
PDB Compounds: (A:) hypothetical protein PF0537

SCOPe Domain Sequences for d1u04a4:

Sequence; same for both SEQRES and ATOM records: (download)

>d1u04a4 c.55.3.15 (A:545-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}

SCOPe Domain Coordinates for d1u04a4:

Click to download the PDB-style file with coordinates for d1u04a4.
(The format of our PDB-style files is described here.)

Timeline for d1u04a4: