SCOPe 2.06: Domain d1idka_: 1idk A:

Lineage for d1idka_ (1idk A:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.80: Single-stranded right-handed beta-helix [51125] (8 superfamilies)
   superhelix turns are made of parallel beta-strands and (short) turns

4. Superfamily b.80.1: Pectin lyase-like [51126] (12 families)
   superhelix turns are made of 3 strands each

5. Family b.80.1.2: Pectin lyase [51133] (1 protein)
   this is a repeat family; one repeat unit is 1idj A:227-250 found in domain

6. Protein Pectin lyase [51134] (2 species)

7. Species Aspergillus niger, type A [TaxId:5061] [51135] (2 PDB entries)

8. Domain d1idka_: 1idk A: [28025]
   CASP2

Details for d1idka_

PDB Entry: 1idk, 1.93 Å

PDB Description: pectin lyase a

PDB Compounds: (A:) pectin lyase a

SCOPe Domain Sequences for d1idka_:

Sequence; same for both SEQRES and ATOM records:

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}
vgvsgsaegfakgvtgggsatpvypdtidelvsylgddearvivltktfdftdsegtttg
tgcapwgtasacqvaidqddwcenyepdapsvsveyynagtlgitvtsnksligegssga
ikgkglrivsgaeniiiqniavtdinpkyvwggdaitlddcdlvwidhvttarigrqhyv
lgtsadnrvsltnnyidgvsdysatcdgyhywaiyldgdadlvtmkgnyiyhtsgrspkv
qdntllhavnnywydisghafeigeggyvlaegnvfqnvdtvletyegeaftvpsstage
vcstylgrdcvingfgssgtfsedstsflsdfegkniasasaytsvasrvvanagqgnl

Timeline for d1idka_:

• d1idka_ first appeared (with stable ids) in SCOP 1.55, called d1idk__
  
• d1idka_ appears in SCOPe 2.05
  
• d1idka_ appears in SCOPe 2.07
  
• d1idka_ appears in the current release, SCOPe 2.08