Lineage for d4x4yd_ (4x4y D:)

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1755446Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1755447Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1755448Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 1757949Protein automated matches [190119] (18 species)
    not a true protein
  7. 1758005Species Human (Homo sapiens) [TaxId:9606] [188740] (120 PDB entries)
  8. 1758240Domain d4x4yd_: 4x4y D: [280099]
    automated match to d1fvcc_
    mutant

Details for d4x4yd_

PDB Entry: 4x4y (more details), 2.49 Å

PDB Description: retrofitting antibodies with stabilizing mutations. herceptin scfv mutant k30d/s52d.
PDB Compounds: (D:) Human Variable Light Chain of Herceptin

SCOPe Domain Sequences for d4x4yd_:

Sequence, based on SEQRES records: (download)

>d4x4yd_ b.1.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliysadflysgvps
rfsgsrsgtdftltisslqpedfatyycqqhyttpptfgqgtkve

Sequence, based on observed residues (ATOM records): (download)

>d4x4yd_ b.1.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliysadflysgsrs
gtdftltisslqpedfatyycqqhyttpptfgqgtkve

SCOPe Domain Coordinates for d4x4yd_:

Click to download the PDB-style file with coordinates for d4x4yd_.
(The format of our PDB-style files is described here.)

Timeline for d4x4yd_:

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Domains from other chains:
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d4x4yb_