SCOPe 2.05: Domain d5f5aa_: 5f5a A:

Lineage for d5f5aa_ (5f5a A:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

5. Family b.82.2.14: Histone demethylase core [254153] (4 proteins)
   Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801

6. Protein automated matches [254635] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [255633] (14 PDB entries)

8. Domain d5f5aa_: 5f5a A: [279923]
   automated match to d3dxua_
   complexed with 5v0, edo, ni, so4, zn

Details for d5f5aa_

PDB Entry: 5f5a, 1.41 Å

PDB Description: crystal structure of human jmjd2d complexed with kdoam16

PDB Compounds: (A:) Lysine-specific demethylase 4D

SCOPe Domain Sequences for d5f5aa_:

Sequence; same for both SEQRES and ATOM records:

>d5f5aa_ b.82.2.14 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgq

Timeline for d5f5aa_:

• d5f5aa_ is new in SCOPe 2.05-stable
  
• d5f5aa_ appears in SCOPe 2.06
  
• d5f5aa_ appears in the current release, SCOPe 2.08