SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.8: Urease, gamma-subunit [54110] (1 superfamily)
alpha(3)-beta(2); antiparallel hairpin
Superfamily d.8.1: Urease, gamma-subunit [54111] (2 families)
Family d.8.1.1: Urease, gamma-subunit [54112] (2 proteins)
automatically mapped to Pfam PF00547
Protein automated matches [279671] (2 species)
not a true protein

Species:

Helicobacter pylori [TaxId:210] [397954] (2 PDB entries)

Domains for 6qsu:

Domain d6qsua1: 6qsu A:1-105 [400135]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuc1: 6qsu C:1-105 [400142]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsue1: 6qsu E:1-105 [401387]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsug1: 6qsu G:1-105 [400128]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsui1: 6qsu I:1-105 [400130]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuk1: 6qsu K:1-105 [400137]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsum1: 6qsu M:1-105 [400132]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuo1: 6qsu O:1-105 [400832]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuq1: 6qsu Q:1-105 [400139]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsus1: 6qsu S:1-105 [400840]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuu1: 6qsu U:1-105 [400144]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domain d6qsuw1: 6qsu W:1-105 [400779]
Other proteins in same PDB: d6qsua2, d6qsuc2, d6qsue2, d6qsug2, d6qsui2, d6qsuk2, d6qsum2, d6qsuo2, d6qsuq2, d6qsus2, d6qsuu2, d6qsuw2
automated match to d1e9ya2
complexed with bme, ni

Domains for 6zja:

Domain d6zjaa1: 6zja A:1-105 [398082]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjac1: 6zja C:1-105 [398002]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjae1: 6zja E:1-105 [397955]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjag1: 6zja G:1-105 [397960]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjai1: 6zja I:1-105 [398080]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjak1: 6zja K:1-105 [397965]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjam1: 6zja M:1-105 [397958]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjao1: 6zja O:1-105 [398084]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjaq1: 6zja Q:1-105 [398075]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjas1: 6zja S:1-105 [398086]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjau1: 6zja U:1-105 [397969]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Domain d6zjaw1: 6zja W:1-105 [397967]
Other proteins in same PDB: d6zjaa2, d6zjac2, d6zjae2, d6zjag2, d6zjai2, d6zjak2, d6zjam2, d6zjao2, d6zjaq2, d6zjas2, d6zjau2, d6zjaw2
automated match to d1e9ya2
complexed with djm, ni

Sporosarcina pasteurii [TaxId:1474] [279673] (11 PDB entries)
1. Domain for 5a6t:
  - Domain d5a6ta_: 5a6t A: [279674]
    Other proteins in same PDB: d5a6tb_
    automated match to d4ac7a_
    complexed with edo, ni, so3, so4
2. Domain for 5fsd:
  - Domain d5fsda_: 5fsd A: [314501]
    Other proteins in same PDB: d5fsdb_
    automated match to d5a6ta_
    complexed with dbx, edo, ni, oh, so4
3. Domain for 5fse:
  - Domain d5fsea_: 5fse A: [314542]
    Other proteins in same PDB: d5fseb_
    automated match to d5a6ta_
    complexed with edo, hqe, ni, oh, so4
4. Domain for 5g4h:
  - Domain d5g4ha_: 5g4h A: [326887]
    Other proteins in same PDB: d5g4hb_
    automated match to d4ubpa_
    complexed with caq, edo, ni, oh, so4
5. Domain for 5ol4:
  - Domain d5ol4a_: 5ol4 A: [347266]
    Other proteins in same PDB: d5ol4b_
    automated match to d5g4ha_
    complexed with 9xn, edo, ni, so4
6. Domain for 6g48:
  - Domain d6g48a_: 6g48 A: [362124]
    Other proteins in same PDB: d6g48b_
    automated match to d5g4ha_
    complexed with ag, edo, ni, oh, so4
7. Domain for 6h8j:
  - Domain d6h8ja_: 6h8j A: [370076]
    Other proteins in same PDB: d6h8jb_
    automated match to d5g4ha_
    complexed with 2pa, edo, ni, so4
8. Domain for 6i9y:
  - Domain d6i9ya_: 6i9y A: [368397]
    Other proteins in same PDB: d6i9yb_
    automated match to d5g4ha_
    complexed with au, edo, ni, oh, so4
9. Domain for 6qdy:
  - Domain d6qdya_: 6qdy A: [376975]
    Other proteins in same PDB: d6qdyb_
    automated match to d5g4ha_
    complexed with edo, f, ni, so4, ure
10. Domain for 6rkg:
  - Domain d6rkga_: 6rkg A: [382162]
    Other proteins in same PDB: d6rkgb_
    automated match to d5g4ha_
    complexed with 2pa, edo, ni, so4
11. Domain for 6rp1:
  - Domain d6rp1a_: 6rp1 A: [382163]
    Other proteins in same PDB: d6rp1b_
    automated match to d5g4ha_
    complexed with 2pa, edo, ni, so4

More info for Protein automated matches from d.8.1.1: Urease, gamma-subunit

Timeline for Protein automated matches from d.8.1.1: Urease, gamma-subunit:

Protein automated matches from d.8.1.1: Urease, gamma-subunit first appeared in SCOPe 2.05
Protein automated matches from d.8.1.1: Urease, gamma-subunit appears in SCOPe 2.06
Protein automated matches from d.8.1.1: Urease, gamma-subunit appears in the current release, SCOPe 2.08