Lineage for d5bnpa_ (5bnp A:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2076195Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2076196Protein automated matches [190988] (13 species)
    not a true protein
  7. 2076217Species Enterovirus d68 [TaxId:42789] [269068] (5 PDB entries)
  8. 2076220Domain d5bnpa_: 5bnp A: [279411]
    automated match to d1h8ta_
    complexed with 4u2

Details for d5bnpa_

PDB Entry: 5bnp (more details), 2.15 Å

PDB Description: crystal structure of human enterovirus d68 in complex with 3'sln
PDB Compounds: (A:) Capsid protein VP1

SCOPe Domain Sequences for d5bnpa_:

Sequence, based on SEQRES records: (download)

>d5bnpa_ b.121.4.0 (A:) automated matches {Enterovirus d68 [TaxId: 42789]}
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssagthknffkwtintksfvqlrrklelftylrfdaeit
ilttvavngnndstymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdppa
rmtipfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtmpymsiananykgrdtapntlnaiignrasvttmphniv

Sequence, based on observed residues (ATOM records): (download)

>d5bnpa_ b.121.4.0 (A:) automated matches {Enterovirus d68 [TaxId: 42789]}
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssthknffkwtintksfvqlrrklelftylrfdaeitil
ttvavnymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdpparmtipfmc
insaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvymkpkhika
waprpprtmpymsiananykgrdtapntlnaiignrasvttmphniv

SCOPe Domain Coordinates for d5bnpa_:

Click to download the PDB-style file with coordinates for d5bnpa_.
(The format of our PDB-style files is described here.)

Timeline for d5bnpa_: