Lineage for d4yqda1 (4yqd A:1-246)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150174Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2150175Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2150238Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 protein domains)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2150251Protein automated matches [196235] (1 species)
    not a true protein
  7. 2150252Species Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)
  8. 2150254Domain d4yqda1: 4yqd A:1-246 [279381]
    Other proteins in same PDB: d4yqda2
    automated match to d1uaja_
    protein/RNA complex; complexed with 4gz

Details for d4yqda1

PDB Entry: 4yqd (more details), 1.45 Å

PDB Description: crystal structure of trmd, a m1g37 trna methyltransferase with sam- competitive compounds
PDB Compounds: (A:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d4yqda1:

Sequence, based on SEQRES records: (download)

>d4yqda1 c.116.1.4 (A:1-246) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfadglldcph
ytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkea
qaehns

Sequence, based on observed residues (ATOM records): (download)

>d4yqda1 c.116.1.4 (A:1-246) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvlgasasfadglldcphytrpe
vlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehn
s

SCOPe Domain Coordinates for d4yqda1:

Click to download the PDB-style file with coordinates for d4yqda1.
(The format of our PDB-style files is described here.)

Timeline for d4yqda1:

  • d4yqda1 first appeared in SCOPe 2.05, called d4yqda_

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Domains from same chain:
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d4yqda2