SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.96: Fe-only hydrogenase [53919] (1 superfamily)
consist of two intertwined domains; contains partial duplication
Superfamily c.96.1: Fe-only hydrogenase [53920] (1 family)
automatically mapped to Pfam PF02906
Family c.96.1.1: Fe-only hydrogenase [53921] (3 proteins)
Protein automated matches [279207] (1 species)
not a true protein

Species:

Clostridium pasteurianum [TaxId:1501] [279208] (17 PDB entries)
1. Domains for 4xdc:
  1. Domain d4xdca3: 4xdc A:210-574 [279365]
    Other proteins in same PDB: d4xdca1, d4xdca2, d4xdca4, d4xdcb1, d4xdcb2, d4xdcb4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d4xdcb3: 4xdc B:210-574 [279368]
    Other proteins in same PDB: d4xdca1, d4xdca2, d4xdca4, d4xdcb1, d4xdcb2, d4xdcb4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
2. Domains for 4xdd:
  1. Domain d4xdda3: 4xdd A:210-574 [279362]
    Other proteins in same PDB: d4xdda1, d4xdda2, d4xdda4, d4xddb1, d4xddb2, d4xddb4
    automated match to d3c8ya1
    complexed with cl, fes, gol, mg, sf4
  2. Domain d4xddb3: 4xdd B:210-574 [279359]
    Other proteins in same PDB: d4xdda1, d4xdda2, d4xdda4, d4xddb1, d4xddb2, d4xddb4
    automated match to d3c8ya1
    complexed with cl, fes, gol, mg, sf4
3. Domains for 5byq:
  1. Domain d5byqa3: 5byq A:210-574 [279212]
    Other proteins in same PDB: d5byqa1, d5byqa2, d5byqa4, d5byqb1, d5byqb2, d5byqb4
    automated match to d3c8ya1
    complexed with 4wv, fes, gol, mg, sf4
  2. Domain d5byqb3: 5byq B:210-574 [279215]
    Other proteins in same PDB: d5byqa1, d5byqa2, d5byqa4, d5byqb1, d5byqb2, d5byqb4
    automated match to d3c8ya1
    complexed with 4wv, fes, gol, mg, sf4
4. Domains for 5byr:
  1. Domain d5byra3: 5byr A:210-572 [279221]
    Other proteins in same PDB: d5byra1, d5byra2, d5byrb1, d5byrb2
    automated match to d3c8ya1
    complexed with 4ww, fes, gol, mg, sf4
  2. Domain d5byrb3: 5byr B:210-573 [279218]
    Other proteins in same PDB: d5byra1, d5byra2, d5byrb1, d5byrb2
    automated match to d3c8ya1
    complexed with 4ww, fes, gol, mg, sf4
5. Domains for 5bys:
  1. Domain d5bysa3: 5bys A:210-574 [279224]
    Other proteins in same PDB: d5bysa1, d5bysa2, d5bysa4, d5bysb1, d5bysb2
    automated match to d3c8ya1
    complexed with 4wx, fes, mg, sf4
  2. Domain d5bysb3: 5bys B:210-572 [279209]
    Other proteins in same PDB: d5bysa1, d5bysa2, d5bysa4, d5bysb1, d5bysb2
    automated match to d3c8ya1
    complexed with 4wx, fes, mg, sf4
6. Domains for 5la3:
  1. Domain d5la3a3: 5la3 A:210-574 [335645]
    Other proteins in same PDB: d5la3a1, d5la3a2, d5la3a4, d5la3b1, d5la3b2, d5la3b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d5la3b3: 5la3 B:210-574 [335640]
    Other proteins in same PDB: d5la3a1, d5la3a2, d5la3a4, d5la3b1, d5la3b2, d5la3b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
7. Domains for 5oef:
  1. Domain d5oefa3: 5oef A:210-574 [342117]
    Other proteins in same PDB: d5oefa1, d5oefa2, d5oefb1, d5oefb2
    automated match to d3c8ya1
    complexed with 9sq, fes, mg, sf4
  2. Domain d5oefb3: 5oef B:210-574 [342088]
    Other proteins in same PDB: d5oefa1, d5oefa2, d5oefb1, d5oefb2
    automated match to d3c8ya1
    complexed with 9sq, fes, mg, sf4
8. Domains for 6gly:
  1. Domain d6glya3: 6gly A:210-574 [359875]
    Other proteins in same PDB: d6glya1, d6glya2, d6glya4, d6glyb1, d6glyb2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6glyb3: 6gly B:210-574 [359910]
    Other proteins in same PDB: d6glya1, d6glya2, d6glya4, d6glyb1, d6glyb2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
9. Domains for 6glz:
  1. Domain d6glza3: 6glz A:210-574 [360086]
    Other proteins in same PDB: d6glza1, d6glza2, d6glza4, d6glzb1, d6glzb2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6glzb3: 6glz B:210-573 [359953]
    Other proteins in same PDB: d6glza1, d6glza2, d6glza4, d6glzb1, d6glzb2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
10. Domains for 6gm0:
  1. Domain d6gm0a3: 6gm0 A:210-574 [360119]
    Other proteins in same PDB: d6gm0a1, d6gm0a2, d6gm0a4, d6gm0b1, d6gm0b2, d6gm0b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm0b3: 6gm0 B:210-574 [359856]
    Other proteins in same PDB: d6gm0a1, d6gm0a2, d6gm0a4, d6gm0b1, d6gm0b2, d6gm0b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
11. Domains for 6gm1:
  1. Domain d6gm1a3: 6gm1 A:210-574 [360012]
    Other proteins in same PDB: d6gm1a1, d6gm1a2, d6gm1a4, d6gm1b1, d6gm1b2, d6gm1b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm1b3: 6gm1 B:210-574 [360093]
    Other proteins in same PDB: d6gm1a1, d6gm1a2, d6gm1a4, d6gm1b1, d6gm1b2, d6gm1b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
12. Domains for 6gm2:
  1. Domain d6gm2a3: 6gm2 A:210-574 [359976]
    Other proteins in same PDB: d6gm2a1, d6gm2a2, d6gm2a4, d6gm2b1, d6gm2b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm2b3: 6gm2 B:210-573 [359923]
    Other proteins in same PDB: d6gm2a1, d6gm2a2, d6gm2a4, d6gm2b1, d6gm2b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
13. Domains for 6gm3:
  1. Domain d6gm3a3: 6gm3 A:210-574 [359868]
    Other proteins in same PDB: d6gm3a1, d6gm3a2, d6gm3a4, d6gm3b1, d6gm3b2, d6gm3b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm3b3: 6gm3 B:210-574 [359936]
    Other proteins in same PDB: d6gm3a1, d6gm3a2, d6gm3a4, d6gm3b1, d6gm3b2, d6gm3b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
14. Domains for 6gm4:
  1. Domain d6gm4a3: 6gm4 A:210-574 [359890]
    Other proteins in same PDB: d6gm4a1, d6gm4a2, d6gm4a4, d6gm4b1, d6gm4b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm4b3: 6gm4 B:210-574 [359940]
    Other proteins in same PDB: d6gm4a1, d6gm4a2, d6gm4a4, d6gm4b1, d6gm4b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
15. Domains for 6gm8:
  1. Domain d6gm8a3: 6gm8 A:210-574 [360070]
    Other proteins in same PDB: d6gm8a1, d6gm8a2, d6gm8a4, d6gm8b1, d6gm8b2, d6gm8b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6gm8b3: 6gm8 B:210-574 [360021]
    Other proteins in same PDB: d6gm8a1, d6gm8a2, d6gm8a4, d6gm8b1, d6gm8b2, d6gm8b4
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
16. Domains for 6h63:
  1. Domain d6h63a3: 6h63 A:210-574 [374096]
    Other proteins in same PDB: d6h63a1, d6h63a2, d6h63a4, d6h63b1, d6h63b2, d6h63b4
    automated match to d3c8ya1
    complexed with fes, fu8, mg, sf4
  2. Domain d6h63b3: 6h63 B:210-574 [374097]
    Other proteins in same PDB: d6h63a1, d6h63a2, d6h63a4, d6h63b1, d6h63b2, d6h63b4
    automated match to d3c8ya1
    complexed with fes, fu8, mg, sf4
17. Domains for 6yf4:
  1. Domain d6yf4a3: 6yf4 A:210-574 [393813]
    Other proteins in same PDB: d6yf4a1, d6yf4a2, d6yf4a4, d6yf4b1, d6yf4b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4
  2. Domain d6yf4b3: 6yf4 B:210-573 [393713]
    Other proteins in same PDB: d6yf4a1, d6yf4a2, d6yf4a4, d6yf4b1, d6yf4b2
    automated match to d3c8ya1
    complexed with 402, fes, mg, sf4

More info for Protein automated matches from c.96.1.1: Fe-only hydrogenase

Timeline for Protein automated matches from c.96.1.1: Fe-only hydrogenase:

Protein automated matches from c.96.1.1: Fe-only hydrogenase first appeared in SCOPe 2.05
Protein automated matches from c.96.1.1: Fe-only hydrogenase appears in SCOPe 2.07