Lineage for d5dgub_ (5dgu B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2058814Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2058815Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2058816Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 protein domains)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 2058832Protein Human immunodeficiency virus type 1 protease [50632] (9 species)
  7. 2059066Species Human immunodeficiency virus type 1 [TaxId:11676] [50633] (466 PDB entries)
    Uniprot P35963 57-155 ! Uniprot P04587 69-167 ! Uniprot P03366 69-167 ! Uniprot P03367 69-167 ! Uniprot P03368 69-167
  8. 2059254Domain d5dgub_: 5dgu B: [278626]
    automated match to d1sdta_
    complexed with 5b7, act, cl, na

Details for d5dgub_

PDB Entry: 5dgu (more details), 1.22 Å

PDB Description: crystal structure of hiv-1 protease inhibitors containing substituted fused-tetrahydropyranyl tetrahydrofuran as p2-ligand grl-004-11a
PDB Compounds: (B:) pol protein

SCOPe Domain Sequences for d5dgub_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5dgub_ b.50.1.1 (B:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

SCOPe Domain Coordinates for d5dgub_:

Click to download the PDB-style file with coordinates for d5dgub_.
(The format of our PDB-style files is described here.)

Timeline for d5dgub_: