Lineage for d5dkib_ (5dki B:)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1934404Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1934405Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1934574Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 1936395Protein automated matches [190144] (7 species)
    not a true protein
  7. 1936658Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189752] (41 PDB entries)
  8. 1936912Domain d5dkib_: 5dki B: [278615]
    Other proteins in same PDB: d5dkia_, d5dkie_, d5dkig_, d5dkii_, d5dkij_, d5dkik_, d5dkil_, d5dkin_, d5dkio_, d5dkis_, d5dkiu_, d5dkiw_, d5dkix_, d5dkiy_, d5dkiz_
    automated match to d1rypc_
    complexed with 5bz, cl, mg

Details for d5dkib_

PDB Entry: 5dki (more details), 2.8 Å

PDB Description: yeast 20s proteasome in complex with alkyne-pi
PDB Compounds: (B:) Proteasome subunit alpha type-3

SCOPe Domain Sequences for d5dkib_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5dkib_ d.153.1.4 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
gsrrydsrttifspegrlyqveyalesishagtaigimasdgivlaaerkvtstlleqdt
steklyklndkiavavagltadaeilintarihaqnylktynedipveilvrrlsdikqg
ytqhgglrpfgvsfiyagyddrygyqlytsnpsgnytgwkaisvgantsaaqtllqmdyk
ddmkvddaielalktlskttdssaltydrlefatirkgandgevyqkifkpqeikdilvk
tgit

SCOPe Domain Coordinates for d5dkib_:

Click to download the PDB-style file with coordinates for d5dkib_.
(The format of our PDB-style files is described here.)

Timeline for d5dkib_: