SCOPe 2.05: Domain d5deca_: 5dec A:

Lineage for d5deca_ (5dec A:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
   core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

4. Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)

5. Family d.218.1.8: RelA/SpoT domain [102945] (3 proteins)
   Pfam PF04607; ppGpp-synthetase

6. Protein automated matches [254696] (3 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:224308] [278608] (1 PDB entry)

8. Domain d5deca_: 5dec A: [278610]
   automated match to d2be3a1

Details for d5deca_

PDB Entry: 5dec, 2 Å

PDB Description: crystal structure of the small alarmone synthetase 1 from bacillus subtilis

PDB Compounds: (A:) GTP pyrophosphokinase YjbM

SCOPe Domain Sequences for d5deca_:

Sequence, based on SEQRES records:

>d5deca_ d.218.1.8 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}
ddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasilekarrksi
plheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiaehkesgyrsyhlv
vlyplqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasr
ldeemseirgevqea

Sequence, based on observed residues (ATOM records):

>d5deca_ d.218.1.8 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}
ddkwerflvpyrqaveelkvklkgirtlyeddhspiefvtgrvkpvasilekarrksipl
heietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiagyrsyhlvvlyplqt
vsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasrldeemse
irgevqea

Timeline for d5deca_:

• d5deca_ is new in SCOPe 2.05-stable
  
• d5deca_ appears in SCOPe 2.06
  
• d5deca_ appears in the current release, SCOPe 2.08