Lineage for d5cq0d_ (5cq0 D:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076458Family b.121.6.1: Papovaviridae-like VP [88649] (3 protein domains)
  6. 2076462Protein Polyomavirus coat proteins [49657] (2 species)
  7. 2076463Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
  8. 2076497Domain d5cq0d_: 5cq0 D: [278583]
    automated match to d1vpsa_
    complexed with gal, gol, nga, sia, so4

Details for d5cq0d_

PDB Entry: 5cq0 (more details), 1.9 Å

PDB Description: crystal structure of murine polyomavirus ra strain vp1 in complex with the gd1a glycan
PDB Compounds: (D:) Capsid protein VP1

SCOPe Domain Sequences for d5cq0d_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5cq0d_ b.121.6.1 (D:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}

SCOPe Domain Coordinates for d5cq0d_:

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Timeline for d5cq0d_: