Lineage for d5cpwe_ (5cpw E:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2823225Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2823226Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2823230Protein Polyomavirus coat proteins [49657] (2 species)
  7. 2823231Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
  8. 2823241Domain d5cpwe_: 5cpw E: [278573]
    automated match to d1vpsa_
    complexed with gol

Details for d5cpwe_

PDB Entry: 5cpw (more details), 1.75 Å

PDB Description: crystal structure of murine polyomavirus pta strain vp1 in complex with the gt1a glycan
PDB Compounds: (E:) vp1

SCOPe Domain Sequences for d5cpwe_:

Sequence, based on SEQRES records: (download)

>d5cpwe_ b.121.6.1 (E:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

Sequence, based on observed residues (ATOM records): (download)

>d5cpwe_ b.121.6.1 (E:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlntlqmweavsvktevvgsgslldvhgfnkptdtvntkgistpve
gsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpiskakldk
dgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplckgegl
ylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

SCOPe Domain Coordinates for d5cpwe_:

Click to download the PDB-style file with coordinates for d5cpwe_.
(The format of our PDB-style files is described here.)

Timeline for d5cpwe_: