SCOPe 2.08: Domain d5deqa2: 5deq A:150-218

Lineage for d5deqa2 (5deq A:150-218)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.68: Nudix-associated domain [140299] (2 proteins)
   PfamB PB002148; this domain is C-terminal to the Nudix domain in some bacterial proteins

6. Protein Hypothetical protein BT0354, C-terminal domain [140300] (1 species)

7. Species Bacteroides thetaiotaomicron [TaxId:818] [140301] (3 PDB entries)
   Uniprot Q8AAV8 150-225

8. Domain d5deqa2: 5deq A:150-218 [278348]
   Other proteins in same PDB: d5deqa1, d5deqb1
   automated match to d2fb1a1
   complexed with ara, fmt, so4

Details for d5deqa2

PDB Entry: 5deq, 1.95 Å

PDB Description: crystal structure of transcriptional factor arar from bacteroides thetaiotaomicron vpi in complex with l-arabinose

PDB Compounds: (A:) transcriptional regulator AraR

SCOPe Domain Sequences for d5deqa2:

Sequence, based on SEQRES records:

>d5deqa2 a.4.5.68 (A:150-218) Hypothetical protein BT0354, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
pigfnllpklftlsqlqslyeaiygepmdkrnfrkrvaemdfiektdkidklgskrgaal
ykfngkayr

Sequence, based on observed residues (ATOM records):

>d5deqa2 a.4.5.68 (A:150-218) Hypothetical protein BT0354, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
pigfnllpklftlsqlqslyeaiygepmdkrnfrkrvaemdfiektdkidkrgaalykfn
gkayr

Timeline for d5deqa2:

• d5deqa2 first appeared in SCOPe 2.05
  
• d5deqa2 appears in SCOPe 2.07