Lineage for d5a86a_ (5a86 A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009403Protein automated matches [190059] (14 species)
    not a true protein
  7. 2009425Species Human (Homo sapiens) [TaxId:9606] [187214] (173 PDB entries)
  8. 2009619Domain d5a86a_: 5a86 A: [278281]
    automated match to d1m13a_
    complexed with d7e

Details for d5a86a_

PDB Entry: 5a86 (more details), 2.25 Å

PDB Description: structure of pregnane x receptor in complex with a sphingosine 1-phosphate receptor 1 antagonist
PDB Compounds: (A:) Nuclear receptor subfamily 1 group I member 2

SCOPe Domain Sequences for d5a86a_:

Sequence, based on SEQRES records: (download)

>d5a86a_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lteeqrmmirelmdaqmktfdttfshfknfrlpgvlssgcelpeslqapsreeaakwsqv
rkdlcslkvslqlrgedgsvwnykppadsggkeifsllphmadmstymfkgiisfakvis
yfrdlpiedqisllkgaafelcqlrfntvfnaetgtwecgrlsycledtaggfqqlllep
mlkfhymlkklqlheeeyvlmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnrp
qpahrflflkimamltelrsinaqhtqrllriqdihpfatplmqelfgit

Sequence, based on observed residues (ATOM records): (download)

>d5a86a_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lteeqrmmirelmdaqmktfdttfshfknfrlpgveeaakwsqvrkdlcslkvslqlrge
dgsvwnykppadsggkeifsllphmadmstymfkgiisfakvisyfrdlpiedqisllkg
aafelcqlrfntvfnaetgtwecgrlsycledtaqqlllepmlkfhymlkklqlheeeyv
lmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnrpqpahrflflkimamltelr
sinaqhtqrllriqdihpfatplmqelfgit

SCOPe Domain Coordinates for d5a86a_:

Click to download the PDB-style file with coordinates for d5a86a_.
(The format of our PDB-style files is described here.)

Timeline for d5a86a_: