SCOPe 2.06: Domain d4zo0c1: 4zo0 C:1-191

Lineage for d4zo0c1 (4zo0 C:1-191)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.3: Replication protein Rep, nuclease domain [75492] (2 proteins)
   automatically mapped to Pfam PF08724

6. Protein automated matches [277252] (2 species)
   not a true protein

7. Species Adeno-associated virus 2 (isolate srivastava/1982) [TaxId:648242] [277998] (1 PDB entry)

8. Domain d4zo0c1: 4zo0 C:1-191 [278001]
   Other proteins in same PDB: d4zo0c2
   automated match to d1uuta_
   complexed with ipa, mg

Details for d4zo0c1

PDB Entry: 4zo0, 2.3 Å

PDB Description: x-ray structure of aav-2 origin binding domain

PDB Compounds: (C:) Protein Rep68

SCOPe Domain Sequences for d4zo0c1:

Sequence, based on SEQRES records:

>d4zo0c1 d.89.1.3 (C:1-191) automated matches {Adeno-associated virus 2 (isolate srivastava/1982) [TaxId: 648242]}
mpgfyeivikvpsdldehlpgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklq
rdfltewrrvskapealffvqfekgesyfhmhvlvettgvksmvlgrflsqirekliqri
yrgieptlpnwfavtktrngagggnkvvdesyipnyllpktqpelqwawtnmeqylsacl
nlterkrlvaq

Sequence, based on observed residues (ATOM records):

>d4zo0c1 d.89.1.3 (C:1-191) automated matches {Adeno-associated virus 2 (isolate srivastava/1982) [TaxId: 648242]}
mpgfyeivikvpsdldehlpgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklq
rdfltewrrvskapealffvqfekgesyfhmhvlvettgvksmvlgrflsqirekliqri
yrgieptlpnwfavtktrnagggnkvvdesyipnyllpktqpelqwawtnmeqylsacln
lterkrlvaq

Timeline for d4zo0c1:

• d4zo0c1 first appeared in SCOPe 2.05, called d4zo0c_
  
• d4zo0c1 appears in SCOPe 2.07
  
• d4zo0c1 appears in the current release, SCOPe 2.08