SCOPe 2.08: Domain d5dkva1: 5dkv A:29-329

Lineage for d5dkva1 (5dkv A:29-329)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Agrobacterium vitis [TaxId:311402] [261009] (3 PDB entries)

8. Domain d5dkva1: 5dkv A:29-329 [277522]
   Other proteins in same PDB: d5dkva2
   automated match to d1guda_
   complexed with t6t

Details for d5dkva1

PDB Entry: 5dkv, 1.68 Å

PDB Description: crystal structure of an abc transporter solute binding protein from agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d- tagatopyranose

PDB Compounds: (A:) ABC transporter substrate binding protein (Ribose)

SCOPe Domain Sequences for d5dkva1:

Sequence; same for both SEQRES and ATOM records:

>d5dkva1 c.93.1.0 (A:29-329) automated matches {Agrobacterium vitis [TaxId: 311402]}
enkkfrialipglttdafyitmhkgaeaaaaaigaqiifqgapdfnpvtqvpvldaviak
kpdailiaptdttqlvqplkkaadagipmitvdtfigtgdyqtgagdgdfplsyiasdnv
lggeiaarslalaigdkgkvyvsnvkpgvsttdqreqgfksemakhpgitvletqfndnd
ankaasqlqavyarnpdlagvfganlfsglgsangvqqagqsgtikvvafdapgsvvdnl
ksglidfaiaqhpaeigyygvisayahltgqsiptkigtgftvinksnvtdpavarfiya
e

Timeline for d5dkva1:

• d5dkva1 first appeared in SCOPe 2.05, called d5dkva_
  
• d5dkva1 appears in SCOPe 2.07