SCOPe 2.08: Domain d5c8ca_: 5c8c A:

Lineage for d5c8ca_ (5c8c A:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry)

8. Domain d5c8ca_: 5c8c A: [277503]
   Other proteins in same PDB: d5c8cc_
   automated match to d4ceya_
   complexed with cl, k, ste

Details for d5c8ca_

PDB Entry: 5c8c, 2.5 Å

PDB Description: crystal structure of recombinant coxsackievirus a16 capsid

PDB Compounds: (A:) vp1

SCOPe Domain Sequences for d5c8ca_:

Sequence, based on SEQRES records:

>d5c8ca_ b.121.4.0 (A:) automated matches {Coxsackievirus a16 (strain tainan/5079/98) [TaxId: 231417]}
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

Sequence, based on observed residues (ATOM records):

>d5c8ca_ b.121.4.0 (A:) automated matches {Coxsackievirus a16 (strain tainan/5079/98) [TaxId: 231417]}
gdpiadmlqvlptaanteassdknlietrcvlnhhstqetaignffsraglvsiitmptt
gtqntdgyvnwdidlmgyaqlrrkcelftymrfdaeftfvvakpngelvpqllqymyvpp
gapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmspasayqwfydgyptfgehlqan
dldygqcpnnmmgtfsirtvgteksphsitlrvymrikhvrawiprplrnqpylfktnpn
ykgndikctstsrdkittl

Timeline for d5c8ca_:

• d5c8ca_ first appeared in SCOPe 2.05
  
• d5c8ca_ appears in SCOPe 2.07