SCOPe 2.05: Domain d4yv1d_: 4yv1 D:

Lineage for d4yv1d_ (4yv1 D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (58 families)

5. Family c.66.1.0: automated matches [191451] (1 protein)
   not a true family

6. Protein automated matches [190689] (49 species)
   not a true protein

7. Species Trypanosoma cruzi [TaxId:353153] [188400] (10 PDB entries)

8. Domain d4yv1d_: 4yv1 D: [277040]
   automated match to d2o06a_
   complexed with 4k2, s4m

Details for d4yv1d_

PDB Entry: 4yv1, 1.85 Å

PDB Description: crystal structure of trypanosoma cruzi spermidine synthase in complex with quinolin-8-yl piperidine-1-carboxylate

PDB Compounds: (D:) Spermidine synthase, putative

SCOPe Domain Sequences for d4yv1d_:

Sequence, based on SEQRES records:

>d4yv1d_ c.66.1.0 (D:) automated matches {Trypanosoma cruzi [TaxId: 353153]}
elisggwfreendqwpgqamslrvekvlydaptkfqhltifesdpkgpwgtvmaldgciq
vtdydefvyhevlghtslcshpkpervliigggdggvlrevlrhgtvehcdlvdidgevm
eqskqhfpqisrsladpratvrvgdglafvrqtpdntydvviidttdpagpasklfgeaf
ykdvlrilkpdgiccnqgesiwldleliekmsrfiretgfasvqyalmhvptypcgsigt
lvcskkagvdvtkplrpvedmpfakdlkyydsemhkasfalprfarhinn

Sequence, based on observed residues (ATOM records):

>d4yv1d_ c.66.1.0 (D:) automated matches {Trypanosoma cruzi [TaxId: 353153]}
elisggwfreendqwpgqamslrvekvlydaptkfqhltifesdpkgpwgtvmaldgciq
vtdydefvyhevlghtslcshpkpervliigggdggvlrevlrhgtvehcdlvdidgevm
eqskqhfpqisrsladpratvrvgdglafvrqtpdntydvviidttdpagpasklfafyk
dvlrilkpdgiccnqgesiwldleliekmsrfiretgfasvqyalmhvptypcgsigtlv
cskkagvdvtkplrpvedmpfakdlkyydsemhkasfalprfarhinn

Timeline for d4yv1d_:

• d4yv1d_ is new in SCOPe 2.05-stable
  
• d4yv1d_ appears in SCOPe 2.06
  
• d4yv1d_ appears in the current release, SCOPe 2.08