Lineage for d5dgda3 (5dgd A:342-525)

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1844143Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1844144Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 1844736Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 1844737Protein automated matches [227126] (15 species)
    not a true protein
  7. 1844885Species Pseudomonas putida [TaxId:303] [254984] (35 PDB entries)
  8. 1844919Domain d5dgda3: 5dgd A:342-525 [276945]
    Other proteins in same PDB: d5dgda2
    automated match to d1q6za3
    complexed with ca, mg, tdp; mutant

Details for d5dgda3

PDB Entry: 5dgd (more details), 1.13 Å

PDB Description: benzoylformate decarboxylase f464i and a460v mutant from pseudomonas putida
PDB Compounds: (A:) Benzoylformate decarboxylase

SCOPe Domain Sequences for d5dgda3:

Sequence; same for both SEQRES and ATOM records: (download)

>d5dgda3 c.36.1.0 (A:342-525) automated matches {Pseudomonas putida [TaxId: 303]}
epakvdqdagrlhpetvfdtlndmapenaiylneststtaqmwqrlnmrnpgsyyfcaag
glgfalpaaigvqlaeperqviavigdgsanysisalwtaaqyniptifvimnngtygvl
rwiagvleaenvpgldvpgidfralakgygvqalkadnleqlkgslqealsakgpvliev
stvs

SCOPe Domain Coordinates for d5dgda3:

Click to download the PDB-style file with coordinates for d5dgda3.
(The format of our PDB-style files is described here.)

Timeline for d5dgda3: