Lineage for d4ymbb1 (4ymb B:2-118,B:119-256)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2144293Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2144526Protein Glutamate receptor ligand binding core [53881] (5 species)
  7. 2144855Species Norway rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (5 PDB entries)
    Uniprot P22756 429-546,667-799! Uniprot P22756 433-544,682-815
  8. 2144859Domain d4ymbb1: 4ymb B:2-118,B:119-256 [275728]
    Other proteins in same PDB: d4ymba_
    automated match to d1ycja1
    complexed with 4e7, act, cl, edo, peg

Details for d4ymbb1

PDB Entry: 4ymb (more details), 1.93 Å

PDB Description: structure of the ligand-binding domain of gluk1 in complex with the antagonist cng10111
PDB Compounds: (B:) Glutamate receptor ionotropic, kainate 1,Glutamate receptor ionotropic, kainate 1

SCOPe Domain Sequences for d4ymbb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ymbb1 c.94.1.1 (B:2-118,B:119-256) Glutamate receptor ligand binding core {Norway rat (Rattus norvegicus), GluR5 [TaxId: 10116]}

SCOPe Domain Coordinates for d4ymbb1:

Click to download the PDB-style file with coordinates for d4ymbb1.
(The format of our PDB-style files is described here.)

Timeline for d4ymbb1: