SCOPe 2.07: Domain d4u62f1: 4u62 F:33-303

Lineage for d4u62f1 (4u62 F:33-303)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (13 species)
   not a true protein

7. Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (6 PDB entries)

8. Domain d4u62f1: 4u62 F:33-303 [275663]
   Other proteins in same PDB: d4u62d2, d4u62f2
   automated match to d4mbzj_
   complexed with edo, gol, sia

Details for d4u62f1

PDB Entry: 4u62, 1.55 Å

PDB Description: trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in complex with 3'-sialyllactose

PDB Compounds: (F:) Structural protein VP1

SCOPe Domain Sequences for d4u62f1:

Sequence, based on SEQRES records:

>d4u62f1 b.121.6.1 (F:33-303) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
vgflvgkdgdmqyrglpryfnillrkrtvrn

Sequence, based on observed residues (ATOM records):

>d4u62f1 b.121.6.1 (F:33-303) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
ievlnlvtsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptystar
inlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfavgge
plelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdpskn
entryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvgkdg
dmqyrglpryfnillrkrtvrn

Timeline for d4u62f1:

• d4u62f1 first appeared in SCOPe 2.05, called d4u62f_
  
• d4u62f1 appears in SCOPe 2.06
  
• d4u62f1 appears in the current release, SCOPe 2.08