Lineage for d4u60b_ (4u60 B:)

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1812227Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1813264Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 1813265Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 1813335Protein automated matches [191200] (6 species)
    not a true protein
  7. 1813561Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (4 PDB entries)
  8. 1813563Domain d4u60b_: 4u60 B: [275649]
    automated match to d4mbzj_
    complexed with bgc, edo, gal, gol, nga, sia

Details for d4u60b_

PDB Entry: 4u60 (more details), 1.5 Å

PDB Description: trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in complex with gm1 oligosaccharide
PDB Compounds: (B:) Structural protein VP1

SCOPe Domain Sequences for d4u60b_:

Sequence, based on SEQRES records: (download)

>d4u60b_ b.121.6.1 (B:) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
vgflvgkdgdmqyrglpryfnillrkrtvrn

Sequence, based on observed residues (ATOM records): (download)

>d4u60b_ b.121.6.1 (B:) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
ievlnlvtgsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptysta
rinlpmltltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfavgge
plelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdpskn
entryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvgkdg
dmqyrglpryfnillrkrtvrn

SCOPe Domain Coordinates for d4u60b_:

Click to download the PDB-style file with coordinates for d4u60b_.
(The format of our PDB-style files is described here.)

Timeline for d4u60b_: